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We design and run computational chemistry workflows that turn complex molecular questions into clear, quantitative answers. Our focus is on free energy perturbation (FEP), ΔΔG predictions, molecular dynamics simulations, and mechanistic modeling for biotech, pharma, and ag-biotech teams.

Whether you’re optimizing a lead series, mapping drug-resistance mutations, or redesigning enzymes, we help you make decisions based on physics-based, reproducible calculations—not guesswork.

Free Energy Perturbation (FEP) & Binding Free Energy Calculations

We build and execute FEP pipelines to predict binding free energies and relative ΔΔG values across ligands or mutations.

What we can help you with

  • Comparing binding affinities across a ligand series

  • Ranking design ideas before synthesis

  • Evaluating the effect of point mutations on binding

  • Prioritizing which candidates move forward to experiments

What you get

  • Well-documented FEP setup and protocol description

  • Plots and tables of predicted ΔG / ΔΔG values with uncertainties

  • Discussion of convergence, limitations, and confidence level

  • A concise, decision-focused report summarizing key takeaways

We are engine-agnostic and can adapt to your preferred MD environment, while keeping the workflow transparent and reproducible.

Mutation ΔΔG & Drug Resistance Profiling
$199.00

Drug resistance often emerges through point mutations that reshape the free energy landscape. We specialize in ΔΔG predictions for mutations to help you understand and anticipate resistance.

Typical questions we address

  • Which mutations are likely to weaken drug binding?

  • How do different clinical variants compare in terms of ΔΔG?

  • Can we prioritize second-generation designs against resistant mutants?

Deliverables

  • Per-mutation ΔΔG predictions for selected residues

  • Ranked lists of mutations (stabilizing, neutral, destabilizing for binding)

  • Visualizations of mutation sites on the structure

  • Strategic commentary to support medicinal chemistry decisions

Contact Us

Have a target, mutation set, or enzyme in mind—and a timeline to match?
Tell us what you’re working on, and we’ll help you see where FEP, ΔΔG predictions, and time-resolved MD can make the most impact.

We’re a remote-first team based between Türkiye and Germany, and we typically work with biotech, pharma, and ag-biotech groups who want clear, decision-ready computational results, not just raw data.

What to include in your message

To help us scope things quickly, it’s useful (but not mandatory) if you share:

  • A short description of your target / system

  • The type of questions you want answered (e.g. ranking ligands, mutation ΔΔG, enzyme variants)

  • Any timing constraints or key milestones

  • Your preferred way of working (one-off study, pilot, ongoing support)